STRINGSTRING
Solyc05g054940.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g054940.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g054940.2.1Uncharacterized protein (281 aa)    
Predicted Functional Partners:
Solyc07g065590.2.1
Nicotinate-nucleotide adenylyltransferase (251 aa)
       
  0.631
Solyc03g044430.2.1
Uncharacterized protein (566 aa)
   
 
  0.631
Solyc02g093290.2.1
Uncharacterized protein (558 aa)
   
 
  0.631
Solyc00g130190.1.1
Annotation not available (730 aa)
   
 
  0.631
Solyc09g092120.2.1
Uncharacterized protein (190 aa)
     
      0.611
Solyc05g053740.2.1
Uncharacterized protein (255 aa)
     
      0.611
Solyc06g054460.1.1
S-adenosylmethionine decarboxylase proenzyme (338 aa)
       
 
  0.599
SAMDC
S-adenosylmethionine decarboxylase proenzyme (360 aa)
       
 
  0.599
Solyc02g089610.1.1
S-adenosylmethionine decarboxylase proenzyme (362 aa)
       
 
  0.599
Solyc01g080380.2.1
Uncharacterized protein (330 aa)
       
 
  0.599
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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