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Solyc05g054940.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g054940.2.1" - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein in Solanum lycopersicum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g054940.2.1Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (281 aa)    
Predicted Functional Partners:
101244453
Phototropic-responsive NPH3 family protein; Belongs to the NPH3 family (631 aa)
           
  0.948
101253854
Uncharacterized protein; tRNA synthetase class I (I, L, M and V) family protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1182 aa)
         
  0.871
101258330
Uncharacterized protein; Ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein (72 aa)
     
      0.779
Solyc01g106880.2.1
Uncharacterized protein; Methyltransferases (340 aa)
         
  0.773
101259889
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; Has 72 Blast hits to /.../teins in 27 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (216 aa)
           
  0.749
101258385
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of transcription; LOCATED IN- integral to membrane, nucleus; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- RNA polymerase II trans /.../on factor SIII, subunit A (InterPro-IPR010684); Has 187 Blast hits to 186 proteins in 77 species- Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source- NCBI BLink) (311 aa)
           
  0.733
Solyc07g054190.2.1
Lumazine-binding family protein (306 aa)
   
   
  0.676
Solyc02g081010.1.1
annotation not available (805 aa)
           
  0.660
101265343
annotation not available (338 aa)
       
 
  0.642
SAMDC
S-adenosylmethionine decarboxylase proenzyme (360 aa)
       
 
  0.642
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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