STRINGSTRING
Solyc05g055000.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g055000.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g055000.2.1Uncharacterized protein (477 aa)    
Predicted Functional Partners:
Solyc12g015910.1.1
Uncharacterized protein (353 aa)
   
  0.962
Solyc05g013710.2.1
Uncharacterized protein (274 aa)
   
  0.950
Solyc10g080080.1.1
Thioredoxin reductase (543 aa)
   
 
  0.944
LOC543920
Cystathionine gamma synthase (540 aa)
   
 
  0.934
Solyc12g015820.1.1
Uncharacterized protein (170 aa)
   
  0.916
Solyc03g112060.2.1
Uncharacterized protein (741 aa)
   
  0.916
Solyc03g032000.2.1
Thioredoxin reductase (328 aa)
         
  0.904
Solyc02g082250.2.1
Thioredoxin reductase (367 aa)
         
  0.904
Solyc08g007010.2.1
Uncharacterized protein (485 aa)
 
  0.875
Solyc02g080440.2.1
Uncharacterized protein (546 aa)
 
  0.870
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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