STRINGSTRING
Solyc05g055210.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g055210.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g055210.1.1Uncharacterized protein (437 aa)    
Predicted Functional Partners:
Solyc06g069020.2.1
Uncharacterized protein (534 aa)
     
  0.982
Solyc03g118990.1.1
Uncharacterized protein (70 aa)
     
  0.982
Solyc03g118980.2.1
Uncharacterized protein (162 aa)
     
  0.982
Solyc06g072120.2.1
40S ribosomal protein SA ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (296 aa)
     
    0.954
Solyc03g019780.2.1
40S ribosomal protein SA ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (298 aa)
     
    0.954
Solyc12g096300.1.1
40S ribosomal protein S6 (249 aa)
     
  0.954
Solyc08g074240.2.1
40S ribosomal protein S6 (249 aa)
     
  0.954
Solyc08g006040.2.1
40S ribosomal protein S6 (249 aa)
     
  0.954
Solyc12g038950.1.1
Uncharacterized protein (130 aa)
     
  0.953
Solyc09g083370.2.1
Uncharacterized protein (151 aa)
     
  0.953
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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