STRINGSTRING
Solyc05g055300.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g055300.1.1" - Protein YIPF in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g055300.1.1Protein YIPF (251 aa)    
Predicted Functional Partners:
Solyc05g052930.2.1
Protein YIPF (265 aa)
     
 
  0.939
Solyc01g098900.2.1
Protein YIPF (280 aa)
     
 
  0.939
Solyc00g042130.1.1
Annotation not available (704 aa)
       
      0.900
Solyc09g063020.2.1
Uncharacterized protein (344 aa)
     
 
  0.817
Solyc07g005670.1.1
Uncharacterized protein (272 aa)
     
 
  0.817
Solyc06g083630.2.1
Uncharacterized protein (293 aa)
     
 
  0.817
Solyc07g018230.1.1
Uncharacterized protein (112 aa)
       
 
  0.742
Solyc07g018220.2.1
Protein YIPF (278 aa)
       
 
  0.742
Solyc07g018210.2.1
Protein YIPF (278 aa)
       
 
  0.742
Rab1A
Small GTP-binding protein (203 aa)
     
 
  0.678
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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