STRINGSTRING
Solyc05g055350.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g055350.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g055350.2.1Uncharacterized protein (361 aa)    
Predicted Functional Partners:
Solyc03g120470.2.1
MIP (1264 aa)
         
  0.905
Solyc12g044370.1.1
Uncharacterized protein (830 aa)
         
  0.896
Solyc10g079670.1.1
Uncharacterized protein (754 aa)
         
  0.896
Solyc03g097160.2.1
Uncharacterized protein (871 aa)
     
        0.831
Solyc03g113140.2.1
Uncharacterized protein (301 aa)
   
   
0.806
Solyc07g042380.2.1
Uncharacterized protein (1248 aa)
     
        0.730
Solyc04g015940.2.1
Uncharacterized protein (1162 aa)
     
        0.730
Solyc01g087670.2.1
Uncharacterized protein (907 aa)
     
        0.729
Solyc05g011990.2.1
Uncharacterized protein (940 aa)
     
        0.721
Solyc05g023710.2.1
Uncharacterized protein (638 aa)
     
        0.617
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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