STRINGSTRING
Solyc05g055540.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g055540.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g055540.1.1Uncharacterized protein (566 aa)    
Predicted Functional Partners:
Solyc08g008310.2.1
Uncharacterized protein (597 aa)
           
  0.519
Solyc08g021820.2.1
IAA29 ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (227 aa)
           
  0.470
Solyc08g014360.1.1
Uncharacterized protein (380 aa)
           
  0.470
Solyc05g018770.1.1
Uncharacterized protein (137 aa)
           
  0.470
Solyc03g097030.2.1
Uncharacterized protein (570 aa)
           
  0.470
Solyc03g005320.2.1
3-ketoacyl-CoA synthase (519 aa)
           
  0.470
Solyc02g069250.2.1
Uncharacterized protein (360 aa)
           
  0.470
Solyc03g036480.1.1
Uncharacterized protein (102 aa)
           
  0.469
Solyc00g282510.1.1
Annotation not available (591 aa)
           
  0.469
Solyc10g011930.1.1
Uncharacterized protein (127 aa)
           
  0.459
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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