STRINGSTRING
Solyc05g055600.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc05g055600.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc05g055600.2.1Uncharacterized protein (597 aa)    
Predicted Functional Partners:
Solyc07g056220.2.1
Uncharacterized protein (843 aa)
     
 
  0.977
Solyc06g005080.2.1
Uncharacterized protein (1067 aa)
     
 
  0.973
Solyc08g067910.2.1
Uncharacterized protein (341 aa)
     
  0.954
Solyc07g054140.2.1
Uncharacterized protein (318 aa)
     
  0.954
Solyc06g065170.2.1
Uncharacterized protein (954 aa)
     
 
  0.952
Solyc11g066560.1.1
Uncharacterized protein (957 aa)
     
 
  0.950
tVPS41
Vacuolar protein sorting-associated protein 41 homolog ; Required for vacuolar assembly and vacuolar traffic (960 aa)
     
 
  0.950
Solyc05g044610.1.1
Uncharacterized protein (1864 aa)
     
 
  0.945
Solyc05g013050.2.1
Uncharacterized protein (221 aa)
       
 
  0.918
Solyc03g115760.2.1
Uncharacterized protein (221 aa)
       
 
  0.918
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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