• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
101253687 protein (Solanum lycopersicum) - STRING interaction network
"101253687" - Ubiquitin-like superfamily protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101253687Ubiquitin-like superfamily protein (93 aa)    
Predicted Functional Partners:
Solyc06g076460.2.1
BTB/POZ domain-containing protein; Belongs to the SKP1 family (82 aa)
     
 
  0.995
101264764
RING/U-box protein (925 aa)
           
  0.943
Solyc12g055910.1.1
annotation not available (1224 aa)
           
  0.929
101259909
GCN5L1 family protein (132 aa)
     
   
  0.906
101258385
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- regulation of transcription; LOCATED IN- integral to membrane, nucleus; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 11 growth stages; CONTAINS InterPro DOMAIN/s- RNA polymerase II trans /.../on factor SIII, subunit A (InterPro-IPR010684); Has 187 Blast hits to 186 proteins in 77 species- Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source- NCBI BLink) (311 aa)
       
 
  0.896
Solyc09g098550.2.1
Ubiquitin-like superfamily protein (432 aa)
           
  0.851
101248739
annotation not available (802 aa)
       
 
  0.793
cul4
Uncharacterized protein; Cullin 4 ; Belongs to the cullin family (785 aa)
       
 
  0.793
101266536
Proteasome activating protein 200 (1813 aa)
           
  0.763
101264529
annotation not available (650 aa)
           
  0.763
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (8%) [HD]