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STRINGSTRING
101245846 protein (Solanum lycopersicum) - STRING interaction network
"101245846" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101245846Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Histone deacetylation protein Rxt3 (InterPro-IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species- Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes /.../9 (source- NCBI BLink) (804 aa)    
Predicted Functional Partners:
101254943
Histone deacetylase 1; Belongs to the histone deacetylase family. HD Type 1 subfamily (498 aa)
     
 
  0.818
101244829
annotation not available (686 aa)
       
 
  0.799
Solyc04g008420.1.1
RING/FYVE/PHD zinc finger superfamily protein (678 aa)
       
 
  0.799
101251672
RING/FYVE/PHD zinc finger superfamily protein (703 aa)
       
 
  0.799
Solyc03g116440.1.1
RING/FYVE/PHD zinc finger superfamily protein (709 aa)
       
 
  0.799
MSI1
WD-40 repeat-containing protein MSI1 (424 aa)
     
 
  0.737
101258377
annotation not available (471 aa)
     
 
  0.690
101256864
annotation not available (449 aa)
     
 
  0.690
Solyc06g084500.2.1
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- rRNA processing (InterPro-IPR013730); Has 898 Blast hits to 687 proteins in 142 species- Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source- NCBI BLink) (172 aa)
           
  0.686
Solyc04g049120.2.1
Uncharacterized protein; Duplicated homeodomain-like superfamily protein (1580 aa)
           
  0.675
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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