STRINGSTRING
Solyc06g005060.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g005060.2.1" - Elongation factor 1-alpha in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g005060.2.1Elongation factor 1-alpha (448 aa)    
Predicted Functional Partners:
Solyc11g028100.1.1
Uncharacterized protein (414 aa)
     
  0.996
Solyc06g011280.2.1
Uncharacterized protein (413 aa)
     
  0.996
Solyc11g072190.1.1
Uncharacterized protein (227 aa)
     
  0.975
DDTFR10
Ripening regulated protein DDTFR10 (241 aa)
     
  0.974
Solyc01g098000.2.1
Uncharacterized protein (241 aa)
     
  0.974
Solyc10g086010.1.1
Uncharacterized protein (435 aa)
     
  0.966
Solyc10g084350.1.1
Uncharacterized protein (206 aa)
     
  0.966
Solyc09g007250.2.1
Uncharacterized protein (406 aa)
     
  0.966
RPL3
Ribosomal protein L3 (389 aa)
     
  0.955
Solyc01g103510.2.1
Uncharacterized protein (443 aa)
     
  0.955
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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