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Solyc06g005190.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g005190.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g005190.2.1annotation not available (1019 aa)    
Predicted Functional Partners:
101245924
Uncharacterized protein; Transcription regulator NOT2/NOT3/NOT5 family protein (848 aa)
     
 
  0.953
CNOT1
Uncharacterized protein; Transcription regulators (2411 aa)
     
 
  0.938
101250941
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII) (1642 aa)
     
        0.848
101247472
annotation not available (1846 aa)
     
   
  0.842
101257890
Ubiquitin-protein ligase 4 (1553 aa)
     
   
  0.842
Solyc01g111530.2.1
annotation not available (1860 aa)
     
   
  0.842
Solyc04g080240.2.1
GYF domain-containing protein (1730 aa)
     
 
  0.808
Solyc10g078950.1.1
annotation not available (561 aa)
     
 
  0.768
101260665
annotation not available (389 aa)
     
 
  0.768
Solyc03g059010.2.1
annotation not available (594 aa)
     
 
  0.768
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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