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STRINGSTRING
101254801 protein (Solanum lycopersicum) - STRING interaction network
"101254801" - RHOMBOID-like 1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101254801RHOMBOID-like 1 (387 aa)    
Predicted Functional Partners:
101249390
Uncharacterized protein; DEGP protease 5 (306 aa)
       
 
  0.775
Solyc06g019200.2.1
Uncharacterized protein; Ethylene-dependent gravitropism-deficient and yellow-green-like 2 (468 aa)
   
   
  0.699
101263173
Lutescent 2; Peptidase M50 family protein (547 aa)
   
   
  0.694
101266682
RHOMBOID-like protein 15 (408 aa)
           
  0.682
101268873
RHOMBOID-like protein 13 (271 aa)
           
  0.682
101248296
Unknown protein; Has 54 Blast hits to 54 proteins in 19 species- Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink) (202 aa)
       
      0.534
Solyc03g114050.2.1
Ribosomal protein L29 family protein (182 aa)
     
        0.519
Solyc12g038600.1.1
RHOMBOID-like protein 12 (190 aa)
     
   
  0.518
Solyc12g038590.1.1
annotation not available (197 aa)
     
   
  0.518
Solyc12g008470.1.1
Cytochrome B5-like protein (84 aa)
           
  0.516
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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