STRINGSTRING
Solyc06g005940.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g005940.2.1" - Protein disulfide-isomerase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g005940.2.1Protein disulfide-isomerase (499 aa)    
Predicted Functional Partners:
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
   
 
  0.963
Solyc03g063560.2.1
Uncharacterized protein (1621 aa)
     
 
  0.960
Solyc07g056390.2.1
Uncharacterized protein (473 aa)
     
  0.949
Solyc07g043560.2.1
Uncharacterized protein (890 aa)
   
  0.909
Solyc06g068700.2.1
Uncharacterized protein (532 aa)
     
  0.887
CNX61.0
Calnexin-like protein (538 aa)
     
  0.887
Solyc10g082030.1.1
Uncharacterized protein (267 aa)
   
  0.884
Solyc01g007740.2.1
Uncharacterized protein (267 aa)
   
  0.884
Solyc10g080080.1.1
Thioredoxin reductase (543 aa)
   
 
  0.868
Solyc04g016010.2.1
Uncharacterized protein (537 aa)
   
 
  0.868
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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