STRINGSTRING
Solyc06g005960.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g005960.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g005960.2.1annotation not available (642 aa)    
Predicted Functional Partners:
Solyc08g005440.2.1
Uncharacterized protein; NB-ARC domain-containing disease resistance protein; Belongs to the disease resistance NB-LRR family (931 aa)
           
  0.697
101246948
annotation not available (405 aa)
           
  0.664
Solyc11g072290.1.1
Protein binding;zinc ion binding (226 aa)
           
  0.564
101248708
annotation not available (254 aa)
           
  0.560
101249560
annotation not available (250 aa)
           
  0.560
101256979
EDS1 (602 aa)
           
  0.517
101256183
Protein kinase superfamily protein; Belongs to the protein kinase superfamily (465 aa)
           
  0.509
Solyc03g096090.2.1
BEST Arabidopsis thaliana protein match is- proline-rich family protein (TAIR-AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryot /.../610 (source- NCBI BLink) (486 aa)
           
  0.506
101247478
Eukaryotic-type carbonic anhydrase family protein (262 aa)
           
  0.502
101262537
Protein of unknown function (DUF300) (443 aa)
           
  0.438
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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