STRINGSTRING
Solyc06g009200.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g009200.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g009200.2.1Uncharacterized protein (410 aa)    
Predicted Functional Partners:
Solyc01g079180.2.1
Pectinesterase (387 aa)
   
 
  0.954
Solyc06g084620.1.1
Pectinesterase (564 aa)
   
 
  0.953
Solyc05g052120.2.1
Pectinesterase (342 aa)
   
 
  0.953
Solyc05g052110.2.1
Pectinesterase (368 aa)
   
 
  0.953
Solyc07g017560.2.1
Pectinesterase (652 aa)
   
 
  0.952
Solyc05g054360.2.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (627 aa)
   
 
  0.952
Solyc01g099940.2.1
Pectinesterase (456 aa)
   
 
  0.952
Solyc01g066360.2.1
Pectinesterase (548 aa)
   
 
  0.952
Solyc12g099410.1.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (559 aa)
   
 
  0.952
Solyc12g008530.1.1
Pectinesterase (378 aa)
       
  0.950
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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