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STRINGSTRING
Solyc06g009510.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g009510.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g009510.1.1annotation not available (113 aa)    
Predicted Functional Partners:
NAC1
NAC domain protein; NAC domain protein 1 (301 aa)
           
  0.730
101248211
annotation not available (289 aa)
           
  0.630
bHLH1
annotation not available (330 aa)
           
  0.630
Solyc01g058520.2.1
Peroxidase superfamily protein; Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily (332 aa)
           
  0.617
101262741
Myb-like transcription factor family protein (342 aa)
           
  0.567
101258208
annotation not available (697 aa)
           
  0.562
101260490
annotation not available (703 aa)
           
  0.562
101247591
annotation not available (695 aa)
           
  0.562
Solyc01g087170.2.1
annotation not available (438 aa)
           
  0.562
Solyc04g078640.1.1
Uncharacterized protein; Related to AP2 1 (148 aa)
           
  0.561
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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