STRINGSTRING
Solyc06g009790.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g009790.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g009790.2.1Uncharacterized protein (457 aa)    
Predicted Functional Partners:
Solyc01g098940.2.1
Pectinesterase (560 aa)
       
  0.623
Solyc07g056290.1.1
Uncharacterized protein (401 aa)
   
     
  0.538
Solyc07g044870.2.1
Uncharacterized protein (405 aa)
   
     
  0.538
Solyc12g099410.1.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (559 aa)
       
  0.529
Solyc12g099230.1.1
Pectinesterase (342 aa)
       
  0.529
Solyc12g098340.1.1
Pectinesterase (334 aa)
       
  0.529
Solyc12g008530.1.1
Pectinesterase (378 aa)
       
  0.529
Solyc11g051020.1.1
Pectinesterase (266 aa)
       
  0.529
Solyc11g005770.1.1
Pectinesterase (559 aa)
       
  0.529
Solyc11g005750.1.1
Pectinesterase (544 aa)
       
  0.529
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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