STRINGSTRING
Solyc06g009820.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g009820.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g009820.2.1Uncharacterized protein (147 aa)    
Predicted Functional Partners:
Solyc12g099260.1.1
Uncharacterized protein (608 aa)
   
   
  0.861
Solyc01g059880.2.1
Uncharacterized protein (608 aa)
   
   
  0.861
Solyc12g014180.1.1
Malate dehydrogenase (342 aa)
   
  0.849
Solyc09g091070.1.1
Malate dehydrogenase (298 aa)
   
  0.849
mMDH
Malate dehydrogenase (346 aa)
   
  0.849
Solyc03g115990.1.1
Uncharacterized protein (412 aa)
   
  0.849
Solyc02g063490.2.1
Malate dehydrogenase (352 aa)
   
  0.849
Solyc00g042130.1.1
Annotation not available (704 aa)
     
 
  0.843
Solyc06g009840.2.1
Uncharacterized protein (165 aa)
 
          0.831
Solyc00g042140.1.1
Annotation not available (399 aa)
     
   
  0.824
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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