• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc06g010100.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g010100.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g010100.1.1annotation not available (855 aa)    
Predicted Functional Partners:
NR
Nitrate reductase [NADH]; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (912 aa)
   
 
  0.928
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
   
 
  0.891
101253058
annotation not available (99 aa)
       
 
  0.864
101263848
Uncharacterized protein; Small ubiquitinrelated modifier 5 (91 aa)
       
 
  0.864
sumo
Small ubiquitin-related modifier; SUMO protein (105 aa)
       
 
  0.864
101266843
annotation not available (99 aa)
       
 
  0.864
Solyc07g049360.2.1
annotation not available (96 aa)
       
 
  0.864
101262030
RING/U-box superfamily protein (255 aa)
       
 
  0.853
101261865
annotation not available (2043 aa)
     
   
  0.844
Solyc09g010830.2.1
annotation not available (1973 aa)
     
   
  0.844
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (12%) [HD]