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STRINGSTRING
Solyc06g010120.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g010120.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g010120.1.1annotation not available (194 aa)    
Predicted Functional Partners:
cdc5
CDC5-like protein (987 aa)
     
      0.756
Solyc04g049770.2.1
annotation not available (423 aa)
     
 
  0.625
UPF2
annotation not available (769 aa)
     
 
  0.625
Solyc02g062620.2.1
CAP-binding protein 20 (257 aa)
     
 
  0.598
101267123
annotation not available (1691 aa)
     
   
  0.594
Solyc03g059420.2.1
Sister chromatid cohesion protein; PHD finger family protein (1620 aa)
     
      0.590
Solyc03g059400.1.1
annotation not available (86 aa)
     
      0.590
101251605
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (230 aa)
           
  0.589
101260105
Protein of unknown function, DUF647 (516 aa)
           
  0.589
101258084
annotation not available (1469 aa)
     
        0.587
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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