STRINGSTRING
Solyc06g011640.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g011640.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g011640.1.1Uncharacterized protein (70 aa)    
Predicted Functional Partners:
Solyc03g007800.2.1
Uncharacterized protein (1294 aa)
     
 
  0.750
pcna
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
   
 
  0.698
Solyc01g088380.1.1
Uncharacterized protein (1428 aa)
     
 
  0.616
Solyc00g029080.1.1
Annotation not available (956 aa)
     
 
  0.616
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
     
   
  0.534
Solyc10g081250.1.1
DNA polymerase (1086 aa)
     
 
  0.512
Solyc11g073220.1.1
Uncharacterized protein (311 aa)
     
 
  0.501
Solyc11g072610.1.1
Uncharacterized protein (371 aa)
     
 
  0.501
Solyc10g079250.1.1
Putative recA protein (395 aa)
     
 
  0.501
Solyc07g066320.2.1
Uncharacterized protein (419 aa)
     
 
  0.501
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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