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Solyc06g017910.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g017910.1.1" - E3 ubiquitin-protein ligase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurence
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[Homology]
Score
Solyc06g017910.1.1E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (87 aa)    
Predicted Functional Partners:
101251046
annotation not available (146 aa)
       
      0.534
Suv
annotation not available (160 aa)
       
      0.534
101253818
annotation not available (146 aa)
       
      0.534
101250874
Ribosomal L18p/L5e family protein (162 aa)
       
      0.408
Solyc11g069080.1.1
Ribosomal L18p/L5e family protein (64 aa)
       
      0.408
101266480
Uncharacterized protein; Ubiquitin-specific protease 24; Belongs to the peptidase C19 family (534 aa)
       
      0.408
101246751
Uncharacterized protein; Ubiquitin-specific protease 5; Belongs to the peptidase C19 family (937 aa)
       
      0.408
Solyc08g083300.2.1
annotation not available (931 aa)
       
      0.408
Solyc07g045390.1.1
Ribosomal L18p/L5e family protein (96 aa)
       
      0.408
101262018
Uncharacterized protein; Ubiquitin-specific protease 8; Belongs to the peptidase C19 family (875 aa)
       
      0.408
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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