• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc06g036000.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g036000.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g036000.2.1annotation not available (390 aa)    
Predicted Functional Partners:
101265201
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1390 aa)
     
 
  0.994
101260591
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1677 aa)
     
 
  0.992
Solyc08g075580.1.1
Uncharacterized protein; DNA binding;DNA-directed RNA polymerases (153 aa)
     
 
  0.982
101254492
annotation not available (371 aa)
     
 
  0.978
Solyc05g025650.2.1
Uncharacterized protein; RNA polymerase III RPC4 (200 aa)
     
 
  0.978
101254548
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1149 aa)
     
 
  0.977
101251637
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1153 aa)
     
 
  0.977
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1096 aa)
     
 
  0.974
101259186
annotation not available (144 aa)
     
 
  0.965
Solyc07g006250.2.1
Uncharacterized protein; RNA polymerase Rpb7 N-terminal domain-containing protein (102 aa)
     
 
  0.963
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (7%) [HD]