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STRINGSTRING
Solyc06g036580.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g036580.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g036580.2.1annotation not available (633 aa)    
Predicted Functional Partners:
cdc5
CDC5-like protein (987 aa)
     
 
  0.980
Solyc07g007210.2.1
annotation not available (925 aa)
     
 
  0.973
Solyc04g016510.2.1
annotation not available (488 aa)
     
 
  0.959
Solyc07g054200.2.1
Uncharacterized protein; pre-mRNA splicing factor-related (753 aa)
     
 
  0.958
101255621
Hydroxyproline-rich glycoprotein family protein (345 aa)
       
 
  0.943
101261833
annotation not available (2384 aa)
     
 
  0.940
Solyc06g043160.1.1
annotation not available (52 aa)
     
 
  0.940
Solyc12g089010.1.1
annotation not available (810 aa)
     
 
  0.939
101253638
annotation not available (1285 aa)
     
 
  0.939
101244419
C2H2 and C2HC zinc fingers superfamily protein (202 aa)
     
 
  0.937
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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