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STRINGSTRING
Solyc06g036600.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g036600.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g036600.1.1annotation not available (381 aa)    
Predicted Functional Partners:
101267262
Uncharacterized protein; RNA binding;abscisic acid binding (743 aa)
       
 
  0.868
Solyc02g014130.1.1
annotation not available (1396 aa)
       
      0.751
Solyc09g064840.2.1
annotation not available (1391 aa)
       
      0.639
cdc5
CDC5-like protein (987 aa)
     
 
  0.618
TNPO1
Uncharacterized protein; Transportin 1 (890 aa)
     
 
  0.616
Solyc07g065920.2.1
annotation not available (311 aa)
     
   
  0.610
101263464
annotation not available (521 aa)
     
 
  0.606
Solyc08g067040.2.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (764 aa)
     
 
  0.605
Solyc06g082720.1.1
Ras-related nuclear protein 4 (203 aa)
     
 
  0.604
RAN1
GTP-binding nuclear protein Ran1; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity) (221 aa)
     
 
  0.604
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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