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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc06g048680.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g048680.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g048680.1.1annotation not available (184 aa)    
Predicted Functional Partners:
Solyc12g008790.1.1
Uncharacterized protein; Bacterial transferase hexapeptide repeat-containing protein (269 aa)
           
  0.594
101263151
annotation not available (574 aa)
           
  0.548
101246168
annotation not available (367 aa)
           
  0.548
101246460
annotation not available (367 aa)
           
  0.548
101258756
annotation not available (627 aa)
           
  0.548
Solyc03g080020.2.1
annotation not available (203 aa)
           
  0.510
101245633
DNA-binding protein (241 aa)
     
   
  0.466
101264454
Major facilitator superfamily protein (433 aa)
     
   
  0.428
Solyc11g013660.1.1
annotation not available (152 aa)
           
  0.426
101257724
annotation not available (136 aa)
           
  0.426
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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