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Solyc06g048860.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g048860.1.1" - Laccase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g048860.1.1Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family (573 aa)    
Predicted Functional Partners:
101248973
Peroxidase superfamily protein; Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily (347 aa)
     
   
  0.853
LOC544053
Plastocyanin, chloroplastic; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I (170 aa)
     
 
  0.690
101260279
annotation not available (528 aa)
     
        0.643
101262753
annotation not available (527 aa)
     
        0.643
101248516
annotation not available (174 aa)
     
        0.563
101261742
annotation not available (186 aa)
     
        0.563
101261449
annotation not available (172 aa)
     
        0.563
101249038
annotation not available (162 aa)
     
   
  0.511
104648108
annotation not available (933 aa)
     
        0.459
104648109
annotation not available (913 aa)
     
        0.459
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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