STRINGSTRING
Solyc06g051170.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g051170.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g051170.2.1Uncharacterized protein (575 aa)    
Predicted Functional Partners:
Solyc11g008520.1.1
Uncharacterized protein (1428 aa)
     
 
  0.733
DCL1
Endoribonuclease Dicer homolog 1 (1888 aa)
     
 
  0.733
Solyc07g005030.2.1
Uncharacterized protein (1536 aa)
     
 
  0.733
Solyc06g048960.2.1
Uncharacterized protein (1399 aa)
     
 
  0.733
SGS3
Protein SUPPRESSOR OF GENE SILENCING 3 ; Required for post-transcriptional gene silencing and natural virus resistance (633 aa)
     
 
  0.502
RPE1
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
 
  0.471
Solyc12g014410.1.1
Uncharacterized protein (391 aa)
     
 
  0.443
Solyc11g008540.1.1
Uncharacterized protein (1352 aa)
     
 
  0.443
Solyc11g008530.1.1
Uncharacterized protein (1317 aa)
     
 
  0.443
Solyc10g006210.1.1
Uncharacterized protein (108 aa)
     
 
  0.443
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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