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Solyc06g051170.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g051170.2.1" - RNA-dependent RNA polymerase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g051170.2.1RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (575 aa)    
Predicted Functional Partners:
101261637
recA DNA recombination family protein; Belongs to the RecA family (419 aa)
           
  0.852
DCL4
Uncharacterized protein; Dicer-like 4; Belongs to the helicase family. Dicer subfamily (1536 aa)
     
 
  0.851
DCL3
Uncharacterized protein; Dicer-like 3 (1430 aa)
     
 
  0.801
DCL
Protein DCL, chloroplastic; Has a function in the early stage of chloroplast development and palisade cell morphogenesis. Required for correct plastid ribosome assembly. Required for processing and maturation of 4.5S rRNA (224 aa)
           
  0.798
101245343
annotation not available (566 aa)
           
  0.777
AGO1-1
Argonaute1-1; Argonaute 1 ; Belongs to the argonaute family (1054 aa)
     
   
  0.761
101249838
DEA(D/H)-box RNA helicase family protein (754 aa)
           
  0.760
101259209
annotation not available (594 aa)
           
  0.752
101245966
RNA helicase; P-loop containing nucleoside triphosphate hydrolases superfamily protein (597 aa)
           
  0.731
CLEB3J9
Thylakoid lumenal 29 kDa protein, chloroplastic (345 aa)
           
  0.730
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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