STRINGSTRING
fer protein (Solanum lycopersicum) - STRING interaction network
"fer" - BHLH transcriptional regulator in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ferBHLH transcriptional regulator (304 aa)    
Predicted Functional Partners:
FRO1
Ferric-chelate reductase (719 aa)
           
  0.922
LOC543597
Iron-regulated transporter 1 (350 aa)
           
  0.921
NRAMP1
Root-specific metal transporter (530 aa)
           
  0.840
SlbHLH068
Putative transcription factor SlbHLH068 (193 aa)
           
  0.818
NRAMP3
Metal transporter (509 aa)
           
  0.699
LOC543598
Iron-regulated transporter 2 (352 aa)
           
  0.699
Solyc02g078520.2.1
Uncharacterized protein (1246 aa)
       
      0.683
Solyc11g008630.1.1
Uncharacterized protein (461 aa)
           
  0.545
CHLN
Nicotianamine synthase ; Synthesizes nicotianamine, a polyamine that serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron (317 aa)
           
  0.520
Solyc06g082150.2.1
Uncharacterized protein (749 aa)
           
  0.514
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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