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STRINGSTRING
fer protein (Solanum lycopersicum) - STRING interaction network
"fer" - BHLH transcriptional regulator in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ferBHLH transcriptional regulator (304 aa)    
Predicted Functional Partners:
SlbHLH068
annotation not available (193 aa)
       
 
  0.881
101267765
Uncharacterized protein; Sensitive to freezing 6 (1246 aa)
       
 
  0.849
101245633
DNA-binding protein (241 aa)
           
  0.811
LOC543597
Iron-regulated transporter 1 (350 aa)
           
  0.806
NRAMP1
Root-specific metal transporter (530 aa)
           
  0.803
FRO1
Uncharacterized protein; Ferric-chelate reductase (719 aa)
           
  0.800
101267471
annotation not available (351 aa)
           
  0.798
NRAMP3
Metal transporter (509 aa)
           
  0.733
101245202
Uncharacterized protein; Basic helix-loop-helix (bHLH) DNA-binding superfamily protein (233 aa)
           
  0.730
LeNramp2
Uncharacterized protein; Putative metal transporter Nramp2 (519 aa)
           
  0.730
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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