STRINGSTRING
Solyc06g052000.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g052000.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g052000.1.1Uncharacterized protein (176 aa)    
Predicted Functional Partners:
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
       
      0.625
Solyc10g085480.1.1
Uncharacterized protein (164 aa)
       
      0.597
Solyc10g083740.1.1
Uncharacterized protein (163 aa)
       
      0.597
Solyc09g008800.2.1
Uncharacterized protein (162 aa)
       
      0.597
Solyc09g075160.2.1
Uncharacterized protein (125 aa)
       
      0.483
Solyc09g075150.2.1
Uncharacterized protein (124 aa)
       
      0.483
Solyc01g099830.2.1
Uncharacterized protein (125 aa)
       
      0.483
Solyc09g018450.2.1
Uncharacterized protein (1084 aa)
     
      0.464
Solyc06g007320.2.1
Uncharacterized protein (1019 aa)
     
      0.464
Solyc09g064940.2.1
Uncharacterized protein (292 aa)
       
 
  0.433
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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