STRINGSTRING
Solyc06g053210.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g053210.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g053210.2.1Uncharacterized protein (188 aa)    
Predicted Functional Partners:
Solyc08g006900.2.1
Uncharacterized protein (133 aa)
     
  0.996
Solyc02g070310.2.1
Uncharacterized protein (133 aa)
     
  0.996
rps3
30S ribosomal protein S3, chloroplastic (352 aa)
     
  0.994
Solyc06g069860.2.1
Uncharacterized protein (120 aa)
     
  0.992
Solyc05g007560.2.1
Uncharacterized protein (120 aa)
     
  0.992
Solyc02g087930.2.1
Uncharacterized protein (120 aa)
     
  0.992
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
 
0.991
LOC778319
Similar to 60S ribosomal protein L35 (123 aa)
     
    0.989
Solyc06g072470.2.1
Uncharacterized protein (164 aa)
     
    0.989
Solyc05g054810.2.1
Uncharacterized protein (123 aa)
     
    0.989
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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