STRINGSTRING
Solyc06g053330.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g053330.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g053330.2.1Uncharacterized protein (621 aa)    
Predicted Functional Partners:
Solyc10g080350.1.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1677 aa)
     
  0.998
POLR1B
Probable DNA-directed RNA polymerase I subunit RPA2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1096 aa)
     
  0.998
Solyc04g054510.2.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (121 aa)
     
  0.995
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
  0.995
Solyc12g015780.1.1
Uncharacterized protein (393 aa)
     
  0.995
Solyc09g083080.2.1
Uncharacterized protein (552 aa)
     
 
  0.988
Solyc05g055880.2.1
Uncharacterized protein (513 aa)
     
 
  0.988
Solyc09g010500.2.1
Uncharacterized protein (144 aa)
     
  0.984
Solyc06g083360.2.1
Uncharacterized protein (71 aa)
     
  0.978
Solyc03g031690.2.1
Uncharacterized protein (109 aa)
     
  0.972
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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