STRINGSTRING
pmt protein (Solanum lycopersicum) - STRING interaction network
"pmt" - Putrescine N-methyltransferase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmtPutrescine N-methyltransferase (340 aa)    
Predicted Functional Partners:
ODC
Ornithine decarboxylase (431 aa)
   
  0.954
Solyc03g098310.1.1
Uncharacterized protein (397 aa)
   
  0.947
Solyc03g098300.1.1
Uncharacterized protein (388 aa)
   
  0.947
CPA
N-carbamoylputrescine amidase ; Involved in polyamine biosynthesis (300 aa)
   
 
  0.906
cuAO
Amine oxidase (721 aa)
         
    0.900
Solyc08g014330.2.1
Amine oxidase (788 aa)
         
    0.900
Solyc06g071700.1.1
Amine oxidase (774 aa)
         
    0.900
Solyc05g013440.2.1
Amine oxidase (776 aa)
         
    0.900
Solyc03g005160.2.1
Amine oxidase (658 aa)
         
    0.900
Solyc03g031880.2.1
Uncharacterized protein (478 aa)
         
  0.813
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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