STRINGSTRING
Solyc06g053770.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g053770.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g053770.2.1Uncharacterized protein (254 aa)    
Predicted Functional Partners:
Solyc03g118070.2.1
Uncharacterized protein (466 aa)
       
      0.599
Solyc01g099280.2.1
Uncharacterized protein (483 aa)
       
      0.599
Solyc01g067590.2.1
Uncharacterized protein (482 aa)
       
      0.599
Solyc07g017990.2.1
DNA ligase (563 aa)
       
 
  0.575
Solyc07g018000.2.1
Uncharacterized protein (574 aa)
       
 
  0.462
Solyc01g091350.2.1
ATP-dependent DNA helicase 2 subunit KU80 ; Single-stranded DNA-dependent ATP-dependent helicase (709 aa)
           
  0.455
Solyc09g098230.2.1
Uncharacterized protein (624 aa)
           
  0.446
Solyc11g066370.1.1
DNA ligase (802 aa)
       
 
  0.401
Solyc02g091120.2.1
DNA ligase (1473 aa)
       
 
  0.400
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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