STRINGSTRING
Solyc06g054030.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g054030.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g054030.2.1Uncharacterized protein (190 aa)    
Predicted Functional Partners:
Solyc11g072450.1.1
Uncharacterized protein (168 aa)
           
  0.517
Solyc02g071040.2.1
Starch synthase IV (1001 aa)
       
 
  0.513
Solyc11g008630.1.1
Uncharacterized protein (461 aa)
           
  0.454
Solyc07g042830.2.1
Starch synthase VI (614 aa)
       
 
  0.440
Solyc06g005020.1.1
Uncharacterized protein (143 aa)
           
  0.430
Solyc06g005010.1.1
Uncharacterized protein (86 aa)
           
  0.430
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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