STRINGSTRING
Solyc06g054080.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g054080.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g054080.2.1Uncharacterized protein (393 aa)    
Predicted Functional Partners:
Solyc03g121020.2.1
Uncharacterized protein (698 aa)
     
  0.995
Solyc07g041510.1.1
Uncharacterized protein (697 aa)
     
  0.988
Solyc03g115240.2.1
Uncharacterized protein (622 aa)
     
  0.988
Solyc07g041550.2.1
Uncharacterized protein (415 aa)
     
  0.988
Solyc02g078580.1.1
Uncharacterized protein (645 aa)
     
  0.987
Solyc04g064700.2.1
Transcription elongation factor SPT5 (1040 aa)
     
  0.968
Solyc11g008150.1.1
Uncharacterized protein (1509 aa)
     
  0.967
Solyc12g009030.1.1
Uncharacterized protein (323 aa)
     
  0.964
Solyc07g041080.2.1
Uncharacterized protein (323 aa)
     
  0.964
Solyc12g088980.1.1
Uncharacterized protein (406 aa)
     
  0.964
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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