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STRINGSTRING
Solyc06g054110.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g054110.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g054110.1.1annotation not available (170 aa)    
Predicted Functional Partners:
101265334
Protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (1080 aa)
     
        0.684
101247486
Uncharacterized protein; Copper transporter 5 (149 aa)
     
   
  0.539
101252315
annotation not available (646 aa)
     
   
  0.537
Solyc08g005580.2.1
annotation not available (655 aa)
     
   
  0.537
101254989
ABC-2 type transporter family protein (675 aa)
     
   
  0.537
101257524
Tonoplast dicarboxylate transporter (552 aa)
           
  0.513
101257901
Uncharacterized protein; NAD(P)-binding Rossmann-fold superfamily protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family (313 aa)
           
  0.499
Solyc04g049130.2.1
Uncharacterized protein; Iron-sulphur cluster biosynthesis family protein (400 aa)
   
        0.468
LOC543912
Aminodeoxychorismate synthase, chloroplastic; Bifunctional enzyme that catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine. In the first step, a glutamine amidotransferase generates ammonia that is channelled between the binding sites of glutamine and chorismate and used along with chorismate in the second step, catalyzed by aminodeoxychorismate synthase, to produce ADC. Required for the synthesis of 4-aminobenzoate (PABA), an important component in tetrahydrofolate biosynthesis. Does not possess ADC lyase activity (902 aa)
           
  0.465
101255211
Tyrosine--tRNA ligase; Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (521 aa)
           
  0.461
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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