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STRINGSTRING
Solyc06g054340.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g054340.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g054340.1.1annotation not available (190 aa)    
Predicted Functional Partners:
LOC543709
Putative sphingolipid delta 4 desaturase DES-1 (332 aa)
     
 
  0.968
101248352
annotation not available (486 aa)
     
 
  0.964
Solyc08g066020.1.1
annotation not available (511 aa)
     
 
  0.964
101246439
annotation not available (489 aa)
     
 
  0.957
Solyc06g030590.1.1
annotation not available (430 aa)
     
 
  0.957
101254177
annotation not available (489 aa)
     
 
  0.957
Solyc09g092120.2.1
annotation not available (190 aa)
         
  0.954
101257860
annotation not available (255 aa)
         
  0.954
Asc-1
Protein ASC1; Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring the sphingolipid biosynthesis. Could salvage the transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi apparatus in ceramides-depleted cells after SAM exposure (308 aa)
     
 
  0.954
101252975
annotation not available (302 aa)
     
 
  0.954
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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