STRINGSTRING
Solyc06g059760.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g059760.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g059760.2.1Uncharacterized protein (898 aa)    
Predicted Functional Partners:
Solyc09g061290.2.1
Uncharacterized protein (762 aa)
     
 
  0.817
Solyc06g083460.2.1
Uncharacterized protein (776 aa)
     
 
  0.817
LOC543885
MADS-box protein 5 ; Probable transcription factor active in inflorescence development and floral organogenesis (241 aa)
       
 
  0.625
Solyc08g082480.2.1
Uncharacterized protein (583 aa)
       
 
  0.498
Solyc05g050590.2.1
Uncharacterized protein (568 aa)
       
 
  0.498
Solyc03g083350.2.1
Uncharacterized protein (580 aa)
       
 
  0.498
Solyc01g095990.2.1
Uncharacterized protein (571 aa)
       
 
  0.498
LOC778307
Floral homeotic protein DEFICIENS (228 aa)
       
 
  0.468
TM6
TDR6 protein (225 aa)
       
 
  0.468
ARF3
Auxin response factor 3 ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (747 aa)
           
  0.428
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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