STRINGSTRING
Solyc06g060790.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g060790.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g060790.1.1Uncharacterized protein (256 aa)    
Predicted Functional Partners:
Solyc03g005730.2.1
Uncharacterized protein (509 aa)
 
  0.995
Solyc09g090900.2.1
Uncharacterized protein (505 aa)
 
  0.993
Solyc05g009030.2.1
3-isopropylmalate dehydrogenase ; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (406 aa)
 
  0.991
IPMS3
2-isopropylmalate synthase A-like (445 aa)
 
 
  0.979
IPMS1
2-isopropylmalate synthase B (612 aa)
 
 
  0.979
ICDH1
Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (373 aa)
 
  0.877
Solyc08g077930.2.1
Isocitrate dehydrogenase [NAD] subunit, mitochondrial (367 aa)
 
  0.877
Solyc08g077920.2.1
Isocitrate dehydrogenase [NAD] subunit, mitochondrial (367 aa)
 
  0.877
Solyc02g082860.2.1
Uncharacterized protein (357 aa)
 
  0.876
Solyc01g080460.2.1
Uncharacterized protein (965 aa)
     
  0.822
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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