STRINGSTRING
Solyc06g062840.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g062840.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g062840.2.1Uncharacterized protein (522 aa)    
Predicted Functional Partners:
Solyc04g008760.1.1
Uncharacterized protein (377 aa)
   
 
  0.998
Solyc11g040390.1.1
Uncharacterized protein (819 aa)
   
  0.994
Solyc06g064550.2.1
Uncharacterized protein (919 aa)
   
  0.994
Solyc11g072010.1.1
Homoserine dehydrogenase (375 aa)
   
  0.978
Solyc11g040380.1.1
Uncharacterized protein (115 aa)
   
  0.977
Solyc10g083760.1.1
Chloroplast threonine deaminase 1 (606 aa)
   
 
  0.956
Solyc10g083540.1.1
Threonine deaminase (592 aa)
   
 
  0.952
TD
Threonine dehydratase biosynthetic, chloroplastic (595 aa)
   
 
  0.952
Solyc02g082830.1.1
Phosphoserine aminotransferase (432 aa)
     
  0.921
Solyc04g009960.2.1
Uncharacterized protein (359 aa)
     
  0.906
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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