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LOC778225 protein (Solanum lycopersicum) - STRING interaction network
"LOC778225" - Isochorismate synthase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC778225Isochorismate synthase (580 aa)    
Predicted Functional Partners:
101244841
annotation not available (283 aa)
 
  0.996
Solyc04g005190.2.1
annotation not available (1055 aa)
 
 
  0.975
LOC543970
Chorimate mutase (255 aa)
   
 
  0.920
101243843
Chorismate mutase 1 (316 aa)
   
 
  0.918
101250390
Aldolase-type TIM barrel family protein (411 aa)
   
 
  0.917
101255433
Aldolase-type TIM barrel family protein; Belongs to the TrpA family (347 aa)
   
 
  0.908
CS1
Chorismate synthase 1, chloroplastic; Catalyzes the last common step of the biosynthesis of aromatic amino acids, produced via the shikimic acid pathway (440 aa)
   
 
  0.906
CS2
Chorismate synthase 2, chloroplastic; Catalyzes the last common step of the biosynthesis of aromatic amino acids, produced via the shikimic acid pathway (431 aa)
   
 
  0.906
101259361
annotation not available (390 aa)
       
  0.896
ncADH
annotation not available (272 aa)
       
  0.894
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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