• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc06g072100.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g072100.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g072100.1.1annotation not available (715 aa)    
Predicted Functional Partners:
100316881
Uncharacterized protein; Starch synthase IV (1001 aa)
           
  0.638
Solyc08g067260.2.1
3-ketoacyl-CoA synthase 10 (506 aa)
     
        0.637
101244954
Uncharacterized protein; Glycosylphosphatidylinositol-anchored lipid protein transfer 1 (186 aa)
     
   
  0.623
101244154
ABC-2 type transporter family protein (688 aa)
   
 
0.588
101268837
annotation not available (682 aa)
   
 
0.584
Solyc02g093120.2.1
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (190 aa)
           
  0.520
101263911
Uncharacterized protein; 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (310 aa)
     
   
  0.510
101253894
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues; Belongs to the glycosyl hydrolase 16 family (313 aa)
           
  0.493
101248317
annotation not available (613 aa)
   
 
   
0.458
101258338
annotation not available (628 aa)
   
 
   
0.456
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (11%) [HD]