STRINGSTRING
Solyc06g072140.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g072140.2.1" - Serine/threonine-protein phosphatase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g072140.2.1Serine/threonine-protein phosphatase (303 aa)    
Predicted Functional Partners:
Solyc11g069490.1.1
Uncharacterized protein (847 aa)
       
  0.433
Solyc06g075160.2.1
Uncharacterized protein (842 aa)
       
  0.433
Solyc02g069780.2.1
Uncharacterized protein (784 aa)
       
  0.433
Solyc01g087180.2.1
Uncharacterized protein (163 aa)
       
  0.433
Solyc00g006490.2.1
Annotation not available (852 aa)
       
  0.433
Solyc10g049850.1.1
Uncharacterized protein (312 aa)
       
 
  0.413
Solyc01g107420.2.1
Uncharacterized protein (104 aa)
       
 
  0.413
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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