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STRINGSTRING
UBC1 protein (Solanum lycopersicum) - STRING interaction network
"UBC1" - Ubiquitin conjugating enzyme in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBC1Ubiquitin conjugating enzyme ; Belongs to the ubiquitin-conjugating enzyme family (194 aa)    
Predicted Functional Partners:
Solyc01g102270.2.1
Uncharacterized protein; Anaphase-promoting complex/cyclosome 11 (50 aa)
     
 
  0.967
101253520
annotation not available (1084 aa)
   
 
  0.959
Solyc06g007320.2.1
annotation not available (1019 aa)
   
 
  0.959
Solyc07g021670.1.1
annotation not available (60 aa)
     
 
  0.918
Solyc00g005480.1.1
annotation not available (121 aa)
     
 
  0.918
101265334
Protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (1080 aa)
     
 
  0.894
101253058
annotation not available (99 aa)
     
 
  0.889
101263848
Uncharacterized protein; Small ubiquitinrelated modifier 5 (91 aa)
     
 
  0.889
sumo
Small ubiquitin-related modifier; SUMO protein (105 aa)
     
 
  0.889
101266843
annotation not available (99 aa)
     
 
  0.889
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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