Solyc06g073070.1.1 protein (Solanum lycopersicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Solyc06g073070.1.1

Uncharacterized protein (215 aa)

Predicted Functional Partners:

Solyc11g062120.1.1

0.888

Solyc11g062100.1.1

0.888

Solyc08g080890.2.1

0.888

Solyc08g080870.2.1

0.888

Solyc08g061610.2.1

0.888

Solyc07g009130.2.1

0.888

Solyc02g092920.2.1

0.888

Solyc02g068490.2.1

0.888

Solyc01g105170.2.1

0.888

Solyc01g105160.2.1

0.888

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc01g105160.2.1	Solyc06g073070.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc01g105170.2.1	Solyc06g073070.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc02g068490.2.1	Solyc06g073070.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc02g092920.2.1	Solyc06g073070.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc01g105160.2.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc01g105170.2.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc02g068490.2.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc02g092920.2.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc07g009130.2.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc08g061610.2.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc08g080870.2.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc08g080890.2.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc11g062100.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc06g073070.1.1	Solyc11g062120.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc07g009130.2.1	Solyc06g073070.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc08g061610.2.1	Solyc06g073070.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc08g080870.2.1	Solyc06g073070.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc08g080890.2.1	Solyc06g073070.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc11g062100.1.1	Solyc06g073070.1.1	Uncharacterized protein	Uncharacterized protein	0.888
Solyc11g062100.1.1	Solyc11g062120.1.1	Uncharacterized protein	Uncharacterized protein	0.904

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Coexpression

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