STRINGSTRING
tVPS41 protein (Solanum lycopersicum) - STRING interaction network
"tVPS41" - Vacuolar protein sorting-associated protein 41 homolog in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tVPS41Vacuolar protein sorting-associated protein 41 homolog ; Required for vacuolar assembly and vacuolar traffic (960 aa)    
Predicted Functional Partners:
Solyc06g005080.2.1
Uncharacterized protein (1067 aa)
     
 
  0.974
Solyc07g056220.2.1
Uncharacterized protein (843 aa)
     
 
  0.969
Solyc06g065170.2.1
Uncharacterized protein (954 aa)
     
 
  0.955
Solyc05g055600.2.1
Uncharacterized protein (597 aa)
     
 
  0.950
Solyc01g016900.1.1
Uncharacterized protein (83 aa)
     
 
  0.950
Solyc07g056660.2.1
Uncharacterized protein (1004 aa)
     
 
  0.926
Solyc05g015210.2.1
Uncharacterized protein (877 aa)
     
 
  0.926
Solyc02g085220.2.1
Uncharacterized protein (1001 aa)
     
 
  0.926
Solyc03g119270.1.1
AP-3 complex subunit delta ; Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles (970 aa)
     
 
  0.915
Solyc04g064820.2.1
Uncharacterized protein (568 aa)
     
 
  0.813
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (13%) [HD]