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tVPS41 protein (Solanum lycopersicum) - STRING interaction network
"tVPS41" - Vacuolar protein sorting-associated protein 41 homolog in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tVPS41Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic (960 aa)    
Predicted Functional Partners:
101255601
Vacuolar protein sorting 11 (954 aa)
     
 
  0.985
Solyc06g005080.2.1
Uncharacterized protein; Zinc ion binding (1067 aa)
     
 
  0.978
101250423
Uncharacterized protein; Vacuoleless1 (VCL1) (843 aa)
     
 
  0.967
101266347
annotation not available (1004 aa)
     
 
  0.954
Solyc05g015210.2.1
Vacuolar sorting protein 39 (877 aa)
     
 
  0.954
101260684
annotation not available (1001 aa)
     
 
  0.954
101263813
Sec1/munc18-like (SM) proteins superfamily; Belongs to the STXBP/unc-18/SEC1 family (597 aa)
     
 
  0.954
Solyc05g024120.1.1
annotation not available (107 aa)
     
 
  0.954
Solyc05g044610.1.1
Transducin family protein / WD-40 repeat family protein (1864 aa)
     
 
  0.939
Solyc05g024110.1.1
annotation not available (41 aa)
     
 
  0.923
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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