STRINGSTRING
Solyc06g075830.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g075830.1.1" - Histone H4 in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g075830.1.1Histone H4 (103 aa)    
Predicted Functional Partners:
101268556
annotation not available (136 aa)
 
 
 
  0.908
101254197
Histone H3 (136 aa)
 
 
 
  0.908
101267861
annotation not available (136 aa)
 
 
 
  0.908
LOC544102
Histone H3 (136 aa)
 
 
 
  0.908
544102
Histone H3 (136 aa)
 
 
 
  0.908
Solyc04g074580.1.1
Histone H3 (136 aa)
 
 
 
  0.908
Solyc01g086800.2.1
annotation not available (85 aa)
     
 
  0.908
101252717
annotation not available (136 aa)
 
 
 
  0.908
101260571
annotation not available (136 aa)
 
 
 
  0.908
101255013
Protein arginine N-methyltransferase; SHK1 binding protein 1; Belongs to the class I-like SAM-binding methyltransferase superfamily (655 aa)
       
 
  0.907
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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