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STRINGSTRING
Solyc06g076960.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g076960.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g076960.1.1annotation not available (134 aa)    
Predicted Functional Partners:
Solyc06g069690.2.1
annotation not available (502 aa)
     
 
  0.888
Solyc03g115770.2.1
annotation not available (552 aa)
     
 
  0.888
101253889
Uncharacterized protein; Cold regulated gene 27 (223 aa)
     
   
  0.831
101267430
annotation not available (644 aa)
     
 
  0.808
101268174
annotation not available (722 aa)
     
 
  0.772
101245619
annotation not available (603 aa)
     
 
  0.772
101265040
BEST Arabidopsis thaliana protein match is- hydroxyproline-rich glycoprotein family protein (TAIR-AT2G25930.1); Has 63 Blast hits to 58 proteins in 21 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryo /.../2 (source- NCBI BLink) (602 aa)
     
 
  0.772
PCL1
LePCL1 protein (322 aa)
     
 
  0.703
Solyc06g005680.2.1
annotation not available (266 aa)
     
 
  0.703
Solyc02g014130.1.1
annotation not available (1396 aa)
       
      0.691
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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