STRINGSTRING
Solyc06g082090.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g082090.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g082090.2.1Uncharacterized protein (387 aa)    
Predicted Functional Partners:
Solyc01g104470.2.1
Uncharacterized protein (229 aa)
   
 
  0.987
Solyc01g098100.2.1
60S ribosome subunit biogenesis protein NIP7 homolog ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.982
Solyc07g047670.2.1
Pescadillo homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (603 aa)
     
 
  0.979
Solyc12g099890.1.1
Uncharacterized protein (812 aa)
     
 
  0.979
Solyc11g011780.1.1
Uncharacterized protein (502 aa)
     
 
  0.977
Solyc06g053800.1.1
Uncharacterized protein (505 aa)
     
 
  0.977
Solyc03g112530.2.1
Uncharacterized protein (481 aa)
     
 
  0.973
Solyc10g083600.1.1
Uncharacterized protein (337 aa)
     
 
  0.973
Solyc07g063280.1.1
Uncharacterized protein (123 aa)
     
 
  0.970
Solyc07g063270.2.1
Uncharacterized protein (516 aa)
     
 
  0.970
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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